User guide

Getting started with using oscar-colony:

• Installation
  • Using conda
  • Using uv
• Typical workflow
  • Fetch and standardise data from a colony management system
  • Calculate historical stats
  • Define the required animals
  • Optimise schemes
• PyRAT
  • Client tokens
  • User tokens
  • Providing tokens to OSCaR
  • Pulling data from the PyRAT API
  • Standardising data from the PyRAT API
• Standard table structure
  • Mutations
  • Parents
  • Un-genotyped animals