Index

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__init__() (oscar_colony.breeding_scheme.BreedingScheme method) (oscar_colony.breeding_scheme.Genotype method) (oscar_colony.historical_stats.BreedingSchemeStatistics method) (oscar_colony.historical_stats.LineStatistics method) (oscar_colony.optimise.estimate_offspring.ExpectedOffspring method) (oscar_colony.optimise.surplus_summary.GenotypeSurplus method) (oscar_colony.optimise.surplus_summary.SurplusSummary method)

A

as_integer_ratio() (oscar_colony.breeding_scheme.Genotype method)

B

bit_count() (oscar_colony.breeding_scheme.Genotype method) bit_length() (oscar_colony.breeding_scheme.Genotype method)

BreedingScheme (class in oscar_colony.breeding_scheme) BreedingSchemeStatistics (class in oscar_colony.historical_stats)

C

calculate_historical_stats_for_line() (in module oscar_colony.historical_stats) calculate_optimal_scheme() (in module oscar_colony.optimise.optimal_scheme_calculator) conjugate() (oscar_colony.breeding_scheme.Genotype method) create_genotype_df() (oscar_colony.optimise.surplus_summary.SurplusSummary method)

create_n_per_genotype_df() (oscar_colony.historical_stats.LineStatistics method) create_scheme_number_df() (oscar_colony.historical_stats.LineStatistics method) create_scheme_proportion_df() (oscar_colony.historical_stats.LineStatistics method) create_scheme_summary_df() (oscar_colony.historical_stats.LineStatistics method) create_surplus_summary() (in module oscar_colony.optimise.surplus_summary)

D

denominator (oscar_colony.breeding_scheme.Genotype attribute)

E

estimate_n_offspring_per_mating() (in module oscar_colony.optimise.estimate_offspring)

ExpectedOffspring (class in oscar_colony.optimise.estimate_offspring)

F

from_bytes() (oscar_colony.breeding_scheme.Genotype class method)

from_string() (oscar_colony.breeding_scheme.Genotype class method)

G

generate_breeding_schemes() (in module oscar_colony.breeding_scheme) Genotype (class in oscar_colony.breeding_scheme) GenotypeSurplus (class in oscar_colony.optimise.surplus_summary) get_pyrat_data() (in module oscar_colony.colony_management.pyrat.api)

get_pyrat_line_id() (in module oscar_colony.colony_management.pyrat.api) get_pyrat_line_mutations() (in module oscar_colony.colony_management.pyrat.api) get_pyrat_line_name() (in module oscar_colony.colony_management.pyrat.api) get_pyrat_lines() (in module oscar_colony.colony_management.pyrat.api)

I

imag (oscar_colony.breeding_scheme.Genotype attribute)

is_integer() (oscar_colony.breeding_scheme.Genotype method)

L

LineStatistics (class in oscar_colony.historical_stats)

M

mendelian_ratio() (oscar_colony.breeding_scheme.BreedingScheme method) module oscar_colony.breeding_scheme oscar_colony.colony_management oscar_colony.colony_management.pyrat oscar_colony.colony_management.pyrat.api oscar_colony.colony_management.pyrat.standardise oscar_colony.historical_stats oscar_colony.optimise oscar_colony.optimise.estimate_offspring oscar_colony.optimise.optimal_scheme_calculator oscar_colony.optimise.surplus_summary

N

numerator (oscar_colony.breeding_scheme.Genotype attribute)

O

oscar_colony.breeding_scheme module oscar_colony.colony_management module oscar_colony.colony_management.pyrat module oscar_colony.colony_management.pyrat.api module oscar_colony.colony_management.pyrat.standardise module

oscar_colony.historical_stats module oscar_colony.optimise module oscar_colony.optimise.estimate_offspring module oscar_colony.optimise.optimal_scheme_calculator module oscar_colony.optimise.surplus_summary module

R

real (oscar_colony.breeding_scheme.Genotype attribute)

S

standardise_pyrat_csv() (in module oscar_colony.colony_management.pyrat.standardise)

SurplusSummary (class in oscar_colony.optimise.surplus_summary)

T

to_bytes() (oscar_colony.breeding_scheme.Genotype method)

to_string() (oscar_colony.breeding_scheme.Genotype class method)